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pvclust package  (RStudio)
90
RStudio pvclust package
Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
Pvclust Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pvclust/pvclust+package/pmc11052025-131-16-19
Average 90 stars, based on 1 article reviews
pvclust package - by Bioz Stars, 2026-09
90/100 stars
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pvclust v2.2–0 package  (RStudio)
90
RStudio pvclust v2.2–0 package
Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
Pvclust V2.2–0 Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pvclust/pvclust+package/pm35878819-69-9-6
Average 90 stars, based on 1 article reviews
pvclust v2.2–0 package - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier
pvclust package in r studio version 3.5.1  (RStudio)
90
RStudio pvclust package in r studio version 3.5.1
Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
Pvclust Package In R Studio Version 3.5.1, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pvclust/pvclust+package+in+r+studio+version+3+5+1/pm34735124-71-11-14
Average 90 stars, based on 1 article reviews
pvclust package in r studio version 3.5.1 - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier
pvclust  (RStudio)
90
RStudio pvclust
Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
Pvclust, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pvclust/pvclust+package/10__1016_slash_j__sajb__2021__01__005-86-7-13
Average 90 stars, based on 1 article reviews
pvclust - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

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Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The pvclust package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.

Journal: Microorganisms

Article Title: A Comparative Analysis of Innate Immune Responses and the Structural Characterization of Spike from SARS-CoV-2 Gamma Variants and Subvariants

doi: 10.3390/microorganisms12040720

Figure Lengend Snippet: Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The pvclust package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.

Article Snippet: The gathered information for each model was subsequently saved, and cluster analysis was performed using the pvclust package within RStudio version 4.2.

Techniques: Residue, Solvent, Variant Assay